Topo Brain

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Inheritance graph

Defined in file : brainvisa/toolboxes/baby/types/PipeBaby.py

Used in the following processes

Brain Detection
Brain Detection (Utrecht)
Inner Surface Initialization
Inner Surface Initialization (Utrecht)
Simplified Brain Detection (Utrecht)
Surface Deformation
Surface Deformation (Utrecht)

Associated formats

Aperio svs
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
Zeiss czi

Associated ontology rules

  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Ltopo_brain_<subject>
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Rtopo_brain_<subject>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Ltopo_brain_<subject>
    {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Rtopo_brain_<subject>

    Key attributes

  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  side
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition ,  analysis ,  side